Fortunatly I found it using the google :)
Suppose we have 2 lists, the first of a dummy class with properties Id and Name, the second of another dummy class with properties Id and Color (just so they are different)
We can perform a 'where not exists' query as follows :
var OnlyInFirstQuery = (from item1 in list1 select item1.Id)
.Except
(from item2 in list2 join list1Item in list1 on list2.Id equals list1Item.Id select item2.Id);
This will give us a list having only the items in list1 that do not exist in list2, just as I needed.
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